SRR939925_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939925_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1970892
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	4453	0.2259383061070825	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA	3006	0.15251977277293732	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC	2532	0.12846974872291328	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	2459	0.12476584206542012	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA	2289	0.11614030601372373	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGTCG	40	1.9444997E-9	2302.3083	110-111
CCGCTCC	400	0.0	2082.8818	108-109
CGTCGCT	45	3.1141099E-9	2046.4962	110-111
CCGCTCG	155	0.0	1897.122	108-109
CCGTTCG	70	0.0	1750.3208	108-109
CCGCGCC	345	0.0	1491.5778	108-109
TTGTTCG	235	0.0	1251.2931	108-109
CGTTGCG	50	1.1721195E-5	1227.8978	110-111
CGCGTTG	25	0.0054205107	1227.8978	110-111
CTCCGCC	250	0.0	1227.8977	110-111
CGTCGCG	40	1.1811062E-5	1225.2246	108-109
CCGCGTG	40	1.1811062E-5	1225.2246	108-109
CCGCGCG	165	0.0	1188.0967	108-109
CGCCGCT	90	4.9774826E-8	1023.2481	110-111
CCGTGCG	75	5.9240847E-8	980.17975	108-109
CCGCGCT	50	2.3061451E-5	980.1796	108-109
CCACGCG	55	3.069012E-5	891.07245	108-109
CGTCGCC	180	0.0	816.8164	108-109
CGTCGGT	80	4.7975034E-5	767.4361	110-111
GGCGTCG	100	2.7284841E-11	735.1347	108-109