Basic Statistics
Measure | Value |
---|---|
Filename | SRR939910_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 682831 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 3263 | 0.4778634830580334 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 2182 | 0.3195519828478789 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 1601 | 0.23446504332697254 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 1062 | 0.15552896690396306 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 1022 | 0.1496710020488232 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 977 | 0.14308079158679088 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 922 | 0.13502608991097356 | No Hit |
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTA | 865 | 0.12667848999239928 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 859 | 0.12579979526412832 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 856 | 0.12536044789999282 | No Hit |
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC | 762 | 0.11159423049041416 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGTTT | 15 | 0.001873347 | 2085.2246 | 110-111 |
CTCCGCC | 85 | 0.0 | 1839.9042 | 110-111 |
CAGTTCG | 15 | 0.0031669685 | 1604.6791 | 108-109 |
GCCGGCA | 15 | 0.0031669685 | 1604.6791 | 108-109 |
TCGCTCG | 15 | 0.0031669685 | 1604.6791 | 108-109 |
CGGTGCG | 15 | 0.0031669685 | 1604.6791 | 108-109 |
TCGCGTG | 15 | 0.0031669685 | 1604.6791 | 108-109 |
AATCGCG | 15 | 0.0031669685 | 1604.6791 | 108-109 |
GTGCGTT | 20 | 0.0033300437 | 1563.9185 | 110-111 |
CAGCGCG | 55 | 1.8120772E-8 | 1312.9192 | 108-109 |
CCGCTCC | 250 | 0.0 | 1155.3689 | 108-109 |
CCGCGCC | 205 | 0.0 | 1056.7399 | 108-109 |
GTTCGCG | 30 | 0.007491018 | 1042.6123 | 110-111 |
CGACGCA | 25 | 0.008794719 | 962.8074 | 108-109 |
CCGCGCT | 25 | 0.008794719 | 962.8074 | 108-109 |
CCGTTGC | 25 | 0.008794719 | 962.8074 | 108-109 |
AATCGCT | 25 | 0.0029357034 | 962.8074 | 108-109 |
CCGCACC | 105 | 2.055458E-10 | 916.9594 | 108-109 |
CCTCACG | 95 | 1.6108788E-7 | 760.1111 | 108-109 |
GGTGTCG | 70 | 6.6192515E-5 | 687.7196 | 108-109 |