SRR939900_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939900_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	634055
Sequences flagged as poor quality	0
Sequence length	125
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2298	0.3624291268107656	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1748	0.27568586321375904	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	1428	0.22521705530277342	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA	1385	0.21843530923973473	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC	1202	0.18957345971563982	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1001	0.15787273974655194	No Hit
GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA	903	0.14241666732381258	No Hit
CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA	821	0.12948403529662253	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	788	0.12427943948080213	No Hit
CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA	765	0.12065199391220005	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGATCG	35	0.007746907	51.079315	5
ATAACGC	75	1.454111E-6	47.674023	3
TATAACG	95	7.3877545E-6	37.637394	2
GTACCTG	725	0.0	35.352917	1
TAACGCA	85	1.6940714E-4	35.054432	4
TACCTGG	745	0.0	34.39569	2
TCGAATA	70	0.0027668849	34.052876	4
TACGTGG	70	0.0027668849	34.052876	5
CGATTGA	35	0.0027888904	34.000507	14-15
GTATCAA	5075	0.0	32.416626	1
TAGGACC	1115	0.0	30.464344	4
GTACATG	3860	0.0	29.648907	1
TACATGG	3885	0.0	29.451136	2
GGTATCA	3665	0.0	29.437397	1
ACCTGGG	830	0.0	29.437277	3
ACATGGG	3735	0.0	28.559744	3
ACGTAGA	85	0.0071452153	28.050196	1
ATCAACG	5825	0.0	28.031511	3
TCAACGC	5830	0.0	28.007471	4
TATCAAC	5855	0.0	27.887882	2