SRR939892_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939892_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1883511
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11201	0.5946872622458801	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9106	0.48345881707088517	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6412	0.34042806227306344	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	2821	0.1497734815459002	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	2676	0.14207509273903896	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	2568	0.13634112038634233	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	2541	0.13490762729816816	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	2530	0.13432361159557868	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	2372	0.1259350224129299	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2019	0.10719342759346773	No Hit
GCCCAGGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGA	1967	0.10443262609031749	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4770	61.971188	1
GTATCAA	8935	43.70443	1
AGGTAAG	1165	32.57816	2
TATCAAC	12160	32.070133	2
ATCAACG	12410	31.38085	3
TCAACGC	12645	30.797655	4
TAAGGTG	1380	30.591743	5
CAACGCA	12890	30.212286	5
GTGGTAT	1890	29.623772	1
AACGCAG	13415	29.029917	6
TGGTATC	1905	28.141418	2
GGTAAGG	1420	28.05978	3
AAGGTAA	1320	27.678144	1
TAAGGTA	640	27.423008	4
GTAAGGT	1470	26.782684	4
ACGCAGA	15195	25.56681	7
CGCAGAG	15440	25.130396	8
GCAGAGT	16385	23.27571	9
GTACATG	10445	22.895084	1
AAGGTGT	1940	22.739168	6