SRR939871_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939871_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1400592
Sequences flagged as poor quality	0
Sequence length	101
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15630	1.1159566811748174	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11287	0.8058735163416613	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8129	0.580397431943064	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4963	0.3543501605035585	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2508	0.17906713732478838	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1953	0.13944103636176702	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1918	0.1369420930577927	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1888	0.13480014165438614	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1558	0.111238676216914	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	1507	0.10759735883112283	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	7215	0.0	43.979675	1
ATGCGAT	25	0.001569151	38.22925	90-91
GTATCAA	12345	0.0	36.88437	1
CATTCCG	295	0.0	33.770477	9
CATGGGT	1015	0.0	32.716885	4
TCGCCGA	45	2.3912937E-5	31.710846	94-95
TCGACGC	60	0.0039759777	31.626318	4
CCGCAGA	180	5.456968E-12	31.620663	1
GTACATG	10180	0.0	29.865685	1
GCGCAGA	175	1.546141E-10	29.813766	1
TATCAAC	15680	0.0	29.70487	2
TCAACGC	15875	0.0	29.315355	4
ATCAACG	15875	0.0	29.225706	3
CAACGCA	15920	0.0	29.143097	5
ACATGGG	10160	0.0	28.902596	3
AACGCAG	16160	0.0	28.739637	6
TACATGG	10980	0.0	28.337643	2
CATGGGG	3245	0.0	27.922777	4
CGCATAT	35	0.008150888	27.306608	90-91
ATGGGTA	855	0.0	25.522993	5