Basic Statistics
Measure | Value |
---|---|
Filename | SRR939862_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1023368 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3464 | 0.3384901618967957 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2647 | 0.2586557328351092 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1920 | 0.18761579412293525 | No Hit |
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA | 1374 | 0.13426255266922554 | No Hit |
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA | 1173 | 0.11462152422198074 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1575 | 0.0 | 59.167683 | 1 |
GTATCAA | 2920 | 0.0 | 42.552097 | 1 |
TATCAAC | 3850 | 0.0 | 32.517776 | 2 |
TCAACGC | 3860 | 0.0 | 32.433533 | 4 |
ATCAACG | 3875 | 0.0 | 32.186523 | 3 |
CAACGCA | 3970 | 0.0 | 31.416317 | 5 |
AACGCAG | 4110 | 0.0 | 30.575203 | 6 |
TGGTATC | 665 | 0.0 | 27.602146 | 2 |
GTGGTAT | 760 | 0.0 | 27.248272 | 1 |
ACGCAGA | 4690 | 0.0 | 26.593342 | 7 |
CGCAGAG | 4735 | 0.0 | 26.14181 | 8 |
GTAAGGT | 370 | 0.0 | 25.440649 | 4 |
TACATGG | 3265 | 0.0 | 25.22637 | 2 |
GTACATG | 3490 | 0.0 | 24.54403 | 1 |
TAAGGTG | 445 | 0.0 | 23.268188 | 5 |
ACATGGG | 3450 | 0.0 | 23.055126 | 3 |
GCAGAGT | 5070 | 0.0 | 22.929197 | 9 |
ACCGTGC | 195 | 4.611138E-7 | 21.7224 | 8 |
CAGAGTA | 4915 | 0.0 | 20.731668 | 10-11 |
GAGTACT | 3320 | 0.0 | 20.625458 | 12-13 |