SRR939800_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939800_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1091665
Sequences flagged as poor quality	0
Sequence length	101
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10004	0.9163983456463293	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7733	0.7083674936908301	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5383	0.49309998946563277	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3141	0.2877256301154658	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1503	0.13767959951083894	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1488	0.13630555161152919	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1443	0.13218340791359987	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	1169	0.10708413295287472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGT	15	0.0051379343	56.67152	94-95
GGTATCA	5500	0.0	41.826683	1
GTATCAA	9215	0.0	35.43002	1
CATTCCG	225	0.0	31.36864	9
CGACGTA	40	0.0068037566	28.33576	94-95
GGGAGCG	100	5.2825864E-5	28.231777	7
TATCAAC	11625	0.0	28.00659	2
GTACATG	6610	0.0	27.756865	1
ATCAACG	11670	0.0	27.617651	3
TCAACGC	11760	0.0	27.4463	4
CAACGCA	11830	0.0	27.283897	5
AACGCAG	11850	0.0	27.278803	6
ACATGGG	6825	0.0	25.57633	3
TACATGG	7100	0.0	25.446026	2
CATGGGG	2345	0.0	24.6791	4
GTACACG	115	1.368362E-4	24.544867	1
ACGCAGA	13060	0.0	24.247046	7
CGCAGAG	13010	0.0	24.087065	8
CGCAGGG	140	1.9144456E-5	23.526482	8
GCAGAGT	12880	0.0	23.124628	9