Basic Statistics
Measure | Value |
---|---|
Filename | SRR939752_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3058367 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19766 | 0.6462926130186469 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13729 | 0.44889969058651236 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10097 | 0.33014350468730536 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 3992 | 0.13052717348833545 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 3093 | 0.1011324017032619 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 19700 | 0.0 | 38.372414 | 1 |
GGTATCA | 11680 | 0.0 | 37.777172 | 1 |
TATCAAC | 24785 | 0.0 | 30.462301 | 2 |
ATCAACG | 25315 | 0.0 | 29.899355 | 3 |
TCAACGC | 25400 | 0.0 | 29.781752 | 4 |
CAACGCA | 25745 | 0.0 | 29.383621 | 5 |
GTACATG | 20265 | 0.0 | 28.690712 | 1 |
AACGCAG | 26550 | 0.0 | 28.548199 | 6 |
TACATGG | 20030 | 0.0 | 28.370213 | 2 |
ACATGGG | 20550 | 0.0 | 26.737125 | 3 |
CATGGGA | 14140 | 0.0 | 25.28495 | 4 |
ACGCAGA | 29525 | 0.0 | 25.161695 | 7 |
CGCAGAG | 29820 | 0.0 | 24.80193 | 8 |
ATGGGAT | 5505 | 0.0 | 23.244688 | 5 |
GCAGAGT | 30395 | 0.0 | 22.784855 | 9 |
AGTACTT | 16425 | 0.0 | 22.025692 | 12-13 |
GAGTACT | 15780 | 0.0 | 21.852724 | 12-13 |
GTATCGC | 130 | 3.1392492E-4 | 21.71479 | 6 |
CATGGGG | 6175 | 0.0 | 20.721914 | 4 |
ATGGGAG | 5290 | 0.0 | 20.632149 | 5 |