Basic Statistics
Measure | Value |
---|---|
Filename | SRR939704_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2986972 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15544 | 0.520393227656637 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12125 | 0.4059294831019507 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8562 | 0.2866448028304249 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 11095 | 0.0 | 32.919308 | 1 |
GTATCAA | 17045 | 0.0 | 31.145302 | 1 |
GTACATG | 13650 | 0.0 | 26.238932 | 1 |
TACATGG | 13660 | 0.0 | 25.664421 | 2 |
TCAACGC | 20685 | 0.0 | 25.38316 | 4 |
ATCAACG | 20720 | 0.0 | 25.29475 | 3 |
CAACGCA | 20995 | 0.0 | 25.053308 | 5 |
TATCAAC | 21230 | 0.0 | 24.892092 | 2 |
AACGCAG | 21225 | 0.0 | 24.810898 | 6 |
ACATGGG | 13745 | 0.0 | 24.299347 | 3 |
ACGCAGA | 23825 | 0.0 | 21.96479 | 7 |
GAGTACT | 11715 | 0.0 | 21.852167 | 12-13 |
CGCAGAG | 23885 | 0.0 | 21.791183 | 8 |
CATGGGA | 9095 | 0.0 | 21.421675 | 4 |
AGTACTT | 12505 | 0.0 | 20.33971 | 12-13 |
CATGGGG | 4715 | 0.0 | 20.31049 | 4 |
GCAGAGT | 24905 | 0.0 | 20.217234 | 9 |
GTACTTT | 12990 | 0.0 | 19.489565 | 14-15 |
AGAGTAC | 20155 | 0.0 | 19.438164 | 10-11 |
ATGGGAT | 4130 | 0.0 | 19.303797 | 5 |