Basic Statistics
Measure | Value |
---|---|
Filename | SRR939605_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2576883 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12016 | 0.46629978931911154 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 11387 | 0.4418904544754263 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 9378 | 0.36392804795561146 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9128 | 0.3542264045360228 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6654 | 0.25821894125577294 | No Hit |
GCTTGTACTCTGCGTTGATACCACTGCTTGTACTCTGCGTTGATACCACT | 6459 | 0.25065165938849376 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 6160 | 0.23904849385866567 | No Hit |
CTGCTTGTACTCTGCGTTGATACCACTGCTTGTACTCTGCGTTGATACCA | 4550 | 0.17656991023651442 | No Hit |
CTTGTACTCTGCGTTGATACCACTGCTTGTACTCTGCGTTGATACCACTG | 4477 | 0.17373703035799454 | No Hit |
GCGTTGATACCACTGCTTGTACTCTGCGTTGATACCACTGCTTGTACTCT | 4169 | 0.16178460566506125 | No Hit |
TGCTTGTACTCTGCGTTGATACCACTGCTTGTACTCTGCGTTGATACCAC | 3630 | 0.140867862452428 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 3436 | 0.13333938715882715 | No Hit |
GTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTG | 2954 | 0.11463461864586012 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 11780 | 0.0 | 25.553988 | 1 |
TACATGG | 11800 | 0.0 | 24.78773 | 2 |
ACATGGG | 11675 | 0.0 | 23.680994 | 3 |
GAGTACT | 9040 | 0.0 | 21.719456 | 12-13 |
CATGGGA | 8315 | 0.0 | 21.581491 | 4 |
AGTACTT | 9445 | 0.0 | 20.115938 | 12-13 |
GTACTTT | 10150 | 0.0 | 19.436892 | 14-15 |
CATGGGG | 3910 | 0.0 | 19.27356 | 4 |
ATGGGAG | 3330 | 0.0 | 18.811617 | 5 |
ATGGGAT | 3575 | 0.0 | 18.708157 | 5 |
ACTTTTT | 11820 | 0.0 | 16.969242 | 16-17 |
TACTTTT | 11595 | 0.0 | 16.487343 | 14-15 |
AGTACAT | 9015 | 0.0 | 16.196571 | 2 |
GTATCAA | 31520 | 0.0 | 14.99056 | 1 |
GCTTATA | 2435 | 0.0 | 14.896865 | 1 |
CGCGTAG | 150 | 2.0815312E-5 | 14.572267 | 66-67 |
GTGTAGC | 1235 | 0.0 | 14.113603 | 1 |
GTGTAGG | 1135 | 0.0 | 14.111922 | 1 |
AACGCAG | 33600 | 0.0 | 13.99657 | 6 |
ATCAACG | 33605 | 0.0 | 13.973654 | 3 |