Basic Statistics
Measure | Value |
---|---|
Filename | SRR939593_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2518565 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5181 | 0.20571237986710686 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 4626 | 0.18367602186165535 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3734 | 0.14825902845469544 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2593 | 0.10295545280745186 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 7180 | 0.0 | 27.428568 | 1 |
TACATGG | 7405 | 0.0 | 26.21169 | 2 |
ACATGGG | 7420 | 0.0 | 25.646019 | 3 |
GTATCAA | 12320 | 0.0 | 23.727364 | 1 |
CAACGCA | 13890 | 0.0 | 20.94336 | 5 |
CATGGGA | 4655 | 0.0 | 20.89843 | 4 |
ATCAACG | 13955 | 0.0 | 20.81139 | 3 |
TCAACGC | 13935 | 0.0 | 20.807205 | 4 |
TATCAAC | 14150 | 0.0 | 20.592484 | 2 |
AACGCAG | 14320 | 0.0 | 20.475288 | 6 |
GAGTACT | 5200 | 0.0 | 18.933628 | 12-13 |
AGAGTAC | 8715 | 0.0 | 18.565475 | 10-11 |
ACGCAGA | 15545 | 0.0 | 18.312391 | 7 |
GGTATCA | 9380 | 0.0 | 18.010536 | 1 |
CGCAGAG | 15700 | 0.0 | 17.860338 | 8 |
GAGTACA | 5980 | 0.0 | 17.855042 | 1 |
GTCCTAG | 1305 | 0.0 | 17.81825 | 1 |
CATGGGG | 3855 | 0.0 | 17.603182 | 4 |
GTACTTT | 5725 | 0.0 | 17.447899 | 14-15 |
AGTACTT | 5465 | 0.0 | 17.234133 | 12-13 |