Basic Statistics
Measure | Value |
---|---|
Filename | SRR939549_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5047905 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10866 | 0.21525761677369126 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8681 | 0.17197233307679127 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5495 | 0.10885704069311922 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9745 | 0.0 | 45.863354 | 1 |
GTATCAA | 16665 | 0.0 | 40.70953 | 1 |
TATCAAC | 21375 | 0.0 | 31.735392 | 2 |
ATCAACG | 21635 | 0.0 | 31.484045 | 3 |
TCAACGC | 22050 | 0.0 | 30.844835 | 4 |
CAACGCA | 22155 | 0.0 | 30.496843 | 5 |
AACGCAG | 23080 | 0.0 | 29.567448 | 6 |
ACGCAGA | 25360 | 0.0 | 26.541058 | 7 |
CGCAGAG | 25620 | 0.0 | 26.088852 | 8 |
GCAGAGT | 26685 | 0.0 | 23.272434 | 9 |
AGAGTAC | 22405 | 0.0 | 21.780329 | 10-11 |
GAGTACT | 16100 | 0.0 | 21.408838 | 12-13 |
TACATGG | 14105 | 0.0 | 21.15514 | 2 |
GTACATG | 15260 | 0.0 | 20.554295 | 1 |
CAGAGTA | 25530 | 0.0 | 20.335392 | 10-11 |
GTACTTT | 16900 | 0.0 | 20.316898 | 14-15 |
AGTACTT | 16760 | 0.0 | 19.979809 | 12-13 |
ACATGGG | 14705 | 0.0 | 19.59128 | 3 |
GTAAGGT | 2365 | 0.0 | 19.239563 | 4 |
GTGGTAT | 5520 | 0.0 | 18.607908 | 1 |