SRR939508_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR939508_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	436761
Sequences flagged as poor quality	0
Sequence length	101
%GC	37

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7833	1.7934293583905156	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5646	1.2926978370321525	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5464	1.251027449795197	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4731	1.083201109989216	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1494	0.34206350841764716	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1466	0.33565267961196166	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1409	0.32260206382895906	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1322	0.3026827028970077	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	916	0.20972568521456814	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	773	0.17698466667124582	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	20	0.0019021519	72.81334	2
GTACGAG	25	0.004819708	57.586887	3
TACGAGT	25	0.004961009	57.168095	4
GGTATCA	2455	0.0	54.547832	1
GTATCAA	4785	0.0	47.473232	1
GTGGTAT	1045	0.0	36.54599	1
GCGGTAT	55	0.0020852012	36.071365	1
TATCAAC	6320	0.0	36.022633	2
TGGTATC	1085	0.0	34.896717	2
ATCAACG	6515	0.0	34.693558	3
TCAACGC	6640	0.0	33.864635	4
CAACGCA	6705	0.0	32.99872	5
CGGTATC	60	0.0035501297	32.36148	2
AACGCAG	6865	0.0	32.35522	6
ACGCAGA	7695	0.0	28.48881	7
GTAACTC	85	6.028443E-4	28.228865	3
CGCAGAG	7775	0.0	28.195677	8
CAACGCG	120	4.709911E-6	28.1804	5
GTACATG	4510	0.0	28.153261	1
CGGGTCG	105	6.1661915E-5	27.592373	6