Basic Statistics
Measure | Value |
---|---|
Filename | SRR939322_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3207980 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7808 | 0.2433930386099664 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7203 | 0.22453381878939394 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 4690 | 0.14619791893964426 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4477 | 0.1395582266722361 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 12635 | 0.0 | 25.723427 | 1 |
GTATCAA | 16885 | 0.0 | 24.18074 | 1 |
GTACATG | 11405 | 0.0 | 23.490728 | 1 |
TACATGG | 11645 | 0.0 | 22.5349 | 2 |
TAGATCG | 130 | 2.9625717E-4 | 21.901707 | 5 |
ACATGGG | 11760 | 0.0 | 21.467146 | 3 |
GAGTACT | 9545 | 0.0 | 21.155376 | 12-13 |
ATCAACG | 19440 | 0.0 | 20.699966 | 3 |
CAACGCA | 19515 | 0.0 | 20.644728 | 5 |
TCAACGC | 19515 | 0.0 | 20.62041 | 4 |
GTACTTT | 9930 | 0.0 | 20.287361 | 14-15 |
AACGCAG | 19955 | 0.0 | 20.18952 | 6 |
TATCAAC | 20175 | 0.0 | 20.016401 | 2 |
AGTACTT | 10165 | 0.0 | 19.048021 | 12-13 |
AGAGTAC | 16680 | 0.0 | 18.96245 | 10-11 |
TGCGCCG | 180 | 1.2434556E-4 | 18.454214 | 5 |
ACGCAGA | 22110 | 0.0 | 18.11439 | 7 |
CGCAGAG | 22110 | 0.0 | 18.007076 | 8 |
CATGGGG | 7235 | 0.0 | 17.70905 | 4 |
TACTTTT | 11300 | 0.0 | 17.071796 | 14-15 |