Basic Statistics
Measure | Value |
---|---|
Filename | SRR939275_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2484815 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5390 | 0.21691755724269213 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4252 | 0.17111937910870628 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2848 | 0.11461617866923694 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 11005 | 0.0 | 28.070398 | 1 |
GGTATCA | 7875 | 0.0 | 26.452795 | 1 |
GTACATG | 9025 | 0.0 | 23.765604 | 1 |
ATCAACG | 12975 | 0.0 | 23.31279 | 3 |
TATCAAC | 13145 | 0.0 | 23.2277 | 2 |
TCAACGC | 13050 | 0.0 | 23.178808 | 4 |
CAACGCA | 13215 | 0.0 | 22.889399 | 5 |
TACATGG | 9170 | 0.0 | 22.438887 | 2 |
AACGCAG | 13615 | 0.0 | 22.309244 | 6 |
GTATAGA | 760 | 0.0 | 21.22868 | 1 |
GAGTACT | 6130 | 0.0 | 21.101847 | 12-13 |
ACGCAGA | 14875 | 0.0 | 20.100964 | 7 |
CGCAGAG | 14885 | 0.0 | 19.960527 | 8 |
ACATGGG | 9530 | 0.0 | 19.949518 | 3 |
GTACTTT | 6455 | 0.0 | 19.8972 | 14-15 |
AGTACTT | 6495 | 0.0 | 18.748747 | 12-13 |
GCAGAGT | 15775 | 0.0 | 18.413097 | 9 |
AGAGTAC | 12075 | 0.0 | 18.383474 | 10-11 |
TAAGGCG | 465 | 0.0 | 18.35272 | 5 |
ATCGCGA | 65 | 0.0075315665 | 18.283926 | 56-57 |