Basic Statistics
Measure | Value |
---|---|
Filename | SRR939164_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2008133 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10305 | 0.5131632217587181 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8691 | 0.4327900592241649 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 5880 | 0.292809291018075 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5743 | 0.28598703372734774 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 3848 | 0.19162077412203277 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 3410 | 0.16980946979109451 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 2926 | 0.145707480530423 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2360 | 0.11752209639500968 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TACCTGG | 1880 | 0.0 | 23.976885 | 2 |
GAGTACT | 8700 | 0.0 | 22.007614 | 12-13 |
TACATGG | 10435 | 0.0 | 21.917025 | 2 |
TATCACG | 130 | 2.964022E-4 | 21.899536 | 2 |
GTACATG | 10490 | 0.0 | 21.893145 | 1 |
GTACCTG | 2190 | 0.0 | 21.539108 | 1 |
ACATGGG | 10360 | 0.0 | 20.930687 | 3 |
AGTACTT | 8905 | 0.0 | 20.834902 | 12-13 |
GTACTTT | 9285 | 0.0 | 20.339947 | 14-15 |
GTAAGCG | 310 | 0.0 | 18.36781 | 94-95 |
GTATCAA | 21525 | 0.0 | 18.040606 | 1 |
CATGGGA | 6335 | 0.0 | 17.901041 | 4 |
GTGTAGC | 1015 | 0.0 | 17.83833 | 1 |
ATTCGCG | 215 | 3.6379788E-12 | 17.679651 | 80-81 |
ATAACGC | 190 | 1.8819491E-4 | 17.481209 | 3 |
TACTTTT | 10575 | 0.0 | 17.41005 | 14-15 |
CATGGGG | 4065 | 0.0 | 17.392126 | 4 |
ACTTTTT | 10905 | 0.0 | 17.361197 | 16-17 |
CGCGGAA | 225 | 7.2759576E-12 | 16.977066 | 82-83 |
GGTATCA | 17375 | 0.0 | 16.618217 | 1 |