Basic Statistics
Measure | Value |
---|---|
Filename | SRR939119_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2208015 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 8024 | 0.3634033283288383 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5933 | 0.2687028847177216 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4750 | 0.21512535014481332 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 4243 | 0.19216354961356694 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 3089 | 0.13989941191522703 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 3046 | 0.13795196137707397 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2942 | 0.13324184844758755 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 8930 | 0.0 | 25.676691 | 1 |
TACATGG | 8885 | 0.0 | 25.325201 | 2 |
TACCTGG | 1925 | 0.0 | 23.87029 | 2 |
ACATGGG | 9000 | 0.0 | 23.790997 | 3 |
GTACCTG | 2145 | 0.0 | 22.131767 | 1 |
GAGTACT | 6065 | 0.0 | 21.159363 | 12-13 |
CATGGGG | 4580 | 0.0 | 20.169067 | 4 |
GTACTTT | 6520 | 0.0 | 19.35745 | 14-15 |
AGAGTAC | 11165 | 0.0 | 18.704195 | 10-11 |
AGTACTT | 6390 | 0.0 | 18.601028 | 12-13 |
CATGGGA | 4710 | 0.0 | 18.40547 | 4 |
GAGTACA | 7605 | 0.0 | 17.977804 | 1 |
CAGTACG | 240 | 3.1847303E-6 | 17.757853 | 9 |
GTATCAA | 17100 | 0.0 | 17.573206 | 1 |
AGTACAT | 6860 | 0.0 | 17.332705 | 2 |
GTGTAGC | 1105 | 0.0 | 16.755049 | 1 |
ATGGGGA | 2845 | 0.0 | 15.818235 | 5 |
TCAACGC | 18750 | 0.0 | 15.76522 | 4 |
CAACGCA | 18740 | 0.0 | 15.748355 | 5 |
ACTTTTT | 8170 | 0.0 | 15.739845 | 16-17 |