Basic Statistics
Measure | Value |
---|---|
Filename | SRR939107_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1966724 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 12144 | 0.6174735245006416 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 6618 | 0.33649866478468765 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6355 | 0.3231261732708809 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5072 | 0.2578907869126527 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 4802 | 0.24416237357148232 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 4307 | 0.2189936157793366 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3238 | 0.16463926814336938 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 3214 | 0.16341896473526535 | No Hit |
TGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCT | 2733 | 0.13896205059784697 | No Hit |
TATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATC | 2555 | 0.12991146698774206 | No Hit |
ACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGC | 2404 | 0.12223372471175417 | No Hit |
GTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGG | 2375 | 0.1207591914269618 | No Hit |
ACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTC | 2045 | 0.10398001956553131 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 8065 | 0.0 | 25.840176 | 1 |
TACATGG | 8140 | 0.0 | 24.852173 | 2 |
ACATGGG | 8430 | 0.0 | 22.929443 | 3 |
GAGTACT | 5850 | 0.0 | 20.682737 | 12-13 |
GGTCGAC | 140 | 4.953117E-4 | 20.29585 | 7 |
TACCTGG | 1655 | 0.0 | 20.038301 | 2 |
CATGGGG | 4760 | 0.0 | 19.607407 | 4 |
GTACTTT | 6310 | 0.0 | 19.289253 | 14-15 |
AGTACTT | 6020 | 0.0 | 18.643387 | 12-13 |
GAGTACA | 6690 | 0.0 | 18.307495 | 1 |
AGTACAT | 6300 | 0.0 | 18.048103 | 2 |
CATGGGA | 3920 | 0.0 | 18.007818 | 4 |
GTACACG | 370 | 1.4370016E-10 | 17.962286 | 1 |
AGAGTAC | 10355 | 0.0 | 17.927053 | 10-11 |
GCACCGT | 795 | 0.0 | 17.87056 | 6 |
GTACCTG | 1980 | 0.0 | 17.262459 | 1 |
ACTTTTT | 7055 | 0.0 | 17.187387 | 16-17 |
GTATAGG | 425 | 5.820766E-11 | 16.75474 | 1 |
TACTTTT | 6750 | 0.0 | 16.277805 | 14-15 |
TATAGCG | 205 | 3.4004383E-4 | 16.177263 | 5 |