SRR938852_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938852_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	841262
Sequences flagged as poor quality	0
Sequence length	101
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6722	0.799037636313063	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5329	0.6334530740720489	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3451	0.41021703107949725	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2306	0.27411198889287763	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1318	0.15666938480520934	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1066	0.12671438862090526	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	975	0.11589730666546212	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	850	0.1010386776057875	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	3650	0.0	44.80055	1
GTATCAA	5955	0.0	36.799076	1
TATAGCG	85	1.645383E-5	33.488464	5
TATCACG	60	0.0039740507	31.627995	2
TATCAAC	7270	0.0	29.953056	2
ATCAACG	7345	0.0	29.647205	3
ATCACGC	65	0.0058781817	29.195068	3
TCAACGC	7485	0.0	29.156065	4
CAACGCA	7585	0.0	28.834223	5
AACGCAG	7675	0.0	28.4961	6
ACAATCG	35	0.00838165	27.150154	86-87
TCACGCA	70	0.008440463	27.109709	4
GTACATG	4175	0.0	26.073345	1
ACGCAGA	8450	0.0	25.714117	7
CGCAGAG	8540	0.0	25.165363	8
TACATGG	4245	0.0	24.475374	2
GCAGAGT	8565	0.0	24.093445	9
GAGTACT	5130	0.0	23.823412	12-13
GCACTAT	100	0.0016461057	23.767733	1
ACATGGG	4205	0.0	23.015852	3