SRR938846_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938846_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117161
Sequences flagged as poor quality	0
Sequence length	101
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	935	0.7980471317247207	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	887	0.7570778672083713	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	537	0.4583436467766578	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	489	0.41737438226030843	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	396	0.3379964322598817	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	247	0.21082100699038075	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	216	0.18436169032357183	No Hit
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA	146	0.12461484623722911	No Hit
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA	127	0.10839784569950753	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	127	0.10839784569950753	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTCT	20	0.002080638	71.15284	4
GTACCCA	40	7.4688232E-6	59.42106	1
TACCCAT	45	1.5197593E-5	52.70581	2
TACAAGA	40	5.4044655E-4	47.435226	2
AGGATAT	25	0.0016036637	38.04578	32-33
GTAGCCC	55	0.002587458	34.49835	3
GAGTACC	55	2.7411334E-6	30.198965	12-13
AGAGGGC	80	4.50513E-4	29.647017	8
GGTATCA	1170	0.0	29.253445	1
CAACAGT	65	0.0058618686	29.190908	4
GTCCCAG	85	6.343651E-4	27.962849	1
ACCCATG	70	0.00841716	27.105846	3
GAGTACT	790	0.0	23.127056	12-13
GTATCAA	1470	0.0	22.910892	2
GTACTTT	870	0.0	21.273163	14-15
CAACGCA	1690	0.0	21.051136	6
AACGCAG	1695	0.0	20.98904	7
ATCAACG	1690	0.0	20.770454	4
TCAACGC	1700	0.0	20.648275	5
AGTACTT	810	0.0	20.50547	12-13