Basic Statistics
Measure | Value |
---|---|
Filename | SRR938843_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 601358 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGT | 2678 | 0.4453254134808218 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2391 | 0.39760009844385547 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1923 | 0.31977623977730407 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1377 | 0.22898173799966076 | No Hit |
ATACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTT | 1301 | 0.21634367548116099 | TruSeq Adapter, Index 3 (95% over 21bp) |
TCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCTTG | 754 | 0.12538288340722165 | TruSeq Adapter, Index 3 (96% over 28bp) |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 685 | 0.11390885296279421 | No Hit |
ACACATCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCT | 671 | 0.1115807888146495 | RNA PCR Primer, Index 3 (95% over 23bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2455 | 0.0 | 26.587858 | 1 |
CCTGCGT | 90 | 9.005883E-4 | 26.357016 | 8 |
GTACATG | 1825 | 0.0 | 22.190664 | 1 |
GTATCAA | 3065 | 0.0 | 22.073547 | 1 |
GTATTAG | 180 | 5.027752E-6 | 21.175407 | 1 |
GTCTAAC | 135 | 3.7159206E-4 | 21.175406 | 1 |
TACATGG | 1855 | 0.0 | 20.716188 | 2 |
CGCAGAA | 145 | 6.1915495E-4 | 19.631433 | 2 |
GAGTACT | 2090 | 0.0 | 19.069437 | 12-13 |
AGACCGT | 125 | 0.006070095 | 18.97705 | 6 |
AGTACTT | 2195 | 0.0 | 18.913782 | 12-13 |
ACATGGG | 1865 | 0.0 | 18.570038 | 3 |
CTATACG | 65 | 0.007608919 | 18.250198 | 40-41 |
ATCAACG | 3720 | 0.0 | 18.10982 | 3 |
GTCATAT | 185 | 1.4848229E-4 | 18.02771 | 1 |
TCAACGC | 3760 | 0.0 | 17.917162 | 4 |
TATCAAC | 3840 | 0.0 | 17.790985 | 2 |
CAACGCA | 3770 | 0.0 | 17.743793 | 5 |
GGGTAAG | 215 | 2.3296256E-5 | 17.728249 | 1 |
AACGCAG | 3850 | 0.0 | 17.375093 | 6 |