Basic Statistics
Measure | Value |
---|---|
Filename | SRR938836_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95135 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 812 | 0.853523939664687 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 614 | 0.6453986440321648 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 405 | 0.42571083197561366 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 167 | 0.175540022073895 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 144 | 0.15136385136910707 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 134 | 0.14085247280180796 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 125 | 0.13139223209123876 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 99 | 0.10406264781626111 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 98 | 0.10301150995953119 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATATATG | 25 | 5.2757554E-5 | 75.92624 | 3 |
TCGCGCT | 30 | 0.003930931 | 31.686014 | 60-61 |
CTTTAAG | 65 | 0.0058451174 | 29.202398 | 2 |
CATGGGC | 100 | 4.9386137E-5 | 28.47234 | 4 |
GGTATCA | 760 | 0.0 | 27.487791 | 1 |
GTATCAA | 1040 | 0.0 | 26.478624 | 1 |
GGTCGCC | 65 | 9.957186E-6 | 25.579052 | 94-95 |
TATCAAC | 1195 | 0.0 | 23.032019 | 2 |
AACGCAG | 1235 | 0.0 | 22.286043 | 6 |
ATCAACG | 1220 | 0.0 | 22.171085 | 3 |
TCAACGC | 1245 | 0.0 | 21.725883 | 4 |
CAACGCA | 1270 | 0.0 | 21.298206 | 5 |
GTCGCCG | 90 | 5.127591E-6 | 21.11287 | 94-95 |
AGTACTT | 770 | 0.0 | 20.953669 | 12-13 |
GAGTACT | 745 | 0.0 | 20.701366 | 12-13 |
ACATGGG | 370 | 0.0 | 20.520605 | 3 |
ACGCAGA | 1365 | 0.0 | 20.16356 | 7 |
GTACATG | 405 | 0.0 | 19.929419 | 1 |
CTCCTGA | 120 | 0.0047441055 | 19.78288 | 1 |
TACATGG | 395 | 0.0 | 19.221832 | 2 |