Basic Statistics
Measure | Value |
---|---|
Filename | SRR938831_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 165094 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2158 | 1.3071341175330418 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1846 | 1.1181508716246502 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1562 | 0.9461276606054732 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1284 | 0.7777387427768423 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1129 | 0.6838528353544041 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 551 | 0.3337492579984736 | No Hit |
CTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGT | 396 | 0.2398633505760355 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 388 | 0.23501762632197415 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 352 | 0.2132118671786982 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 256 | 0.15506317612996232 | No Hit |
ATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTT | 198 | 0.11993167528801775 | TruSeq Adapter, Index 1 (95% over 21bp) |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 194 | 0.11750881316098707 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 183 | 0.11084594231165275 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 174 | 0.10539450252583377 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGCCCG | 15 | 6.637448E-4 | 94.89306 | 5 |
CTACTAG | 25 | 0.004969954 | 57.1262 | 1 |
GGTATCA | 1165 | 0.0 | 37.18515 | 1 |
GTATCAA | 1840 | 0.0 | 34.15153 | 1 |
CTGGACT | 85 | 1.6363483E-5 | 33.49167 | 4 |
GTGTGAG | 65 | 0.0057670516 | 29.295486 | 1 |
CTGGCCC | 65 | 0.0058619445 | 29.197866 | 4 |
TATCAAC | 2190 | 0.0 | 28.81456 | 2 |
ATCAACG | 2225 | 0.0 | 28.148054 | 3 |
TCAACGC | 2230 | 0.0 | 28.084942 | 4 |
CAACGCA | 2270 | 0.0 | 27.79907 | 5 |
AACGCAG | 2270 | 0.0 | 27.590054 | 6 |
CCTCTAC | 70 | 0.008281227 | 27.202953 | 1 |
GGGTACC | 35 | 0.00842924 | 27.112305 | 42-43 |
TATAGAG | 70 | 0.008417244 | 27.112305 | 5 |
ACGCAGA | 2520 | 0.0 | 24.852945 | 7 |
CGCAGAG | 2525 | 0.0 | 24.80373 | 8 |
TGGACTG | 115 | 1.2850543E-4 | 24.754711 | 5 |
GAGTACT | 1535 | 0.0 | 24.727835 | 12-13 |
GCAGAGT | 2535 | 0.0 | 23.957222 | 9 |