SRR938820_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938820_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	218852
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2070	0.9458446804232998	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1842	0.841664686637545	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1117	0.5103905835907371	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	956	0.4368248862244805	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	628	0.28695191270813153	No Hit
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT	449	0.2051614789903679	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	427	0.19510902344963718	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	373	0.17043481439511635	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	317	0.14484674574598358	No Hit
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT	291	0.1329665710160291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACC	40	5.4234546E-4	47.41993	4
TAATACC	55	0.00259646	34.487225	4
AGCTCCG	60	0.003976709	31.613289	5
GGTATCA	2130	0.0	30.77212	1
GTCGGGA	65	0.00588213	29.181498	2
GTTATTC	85	6.4537826E-4	27.89408	3
CGACGAG	35	0.008365861	27.156206	90-91
AAGCCGA	35	0.008422237	27.118849	24-25
GGGGCGC	70	0.008446162	27.097103	6
ATGGGGA	180	6.7557266E-9	26.344408	5
GTACATG	1340	0.0	25.87474	1
TACATGG	1385	0.0	24.651516	2
ACATGGG	1360	0.0	24.40732	3
GTATCAA	2745	0.0	24.012278	2
CATGGGG	480	0.0	23.709967	4
CGATACC	55	0.0028644295	21.604008	94-95
ATCAACG	3245	0.0	21.189184	4
AACGCTT	90	5.1397965E-6	21.11907	42-43
GAGTACT	1775	0.0	21.114883	12-13
TATCAAC	3230	0.0	20.993963	3