Basic Statistics
Measure | Value |
---|---|
Filename | SRR938801_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1003452 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6749 | 0.6725782598470081 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5327 | 0.5308674455778652 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3369 | 0.33574102199208333 | No Hit |
GAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGT | 3129 | 0.31182358498463303 | No Hit |
GCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTT | 2348 | 0.23399225872288862 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1976 | 0.19692023136134068 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1500 | 0.14948398129656426 | No Hit |
GCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGT | 1257 | 0.12526757632652086 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1179 | 0.11749440929909952 | No Hit |
CTGCTTACTCTGCGTTGATACCACTGCTTACTCTGCGTTGATACCACTGC | 1156 | 0.11520232158588552 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1082 | 0.10782777850858835 | No Hit |
GTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTAT | 1016 | 0.10125048333153952 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTACATG | 4015 | 0.0 | 24.19523 | 1 |
TATTCCG | 120 | 1.7430993E-4 | 23.684166 | 5 |
GAGTACT | 5650 | 0.0 | 23.377909 | 12-13 |
TACATGG | 4120 | 0.0 | 22.879364 | 2 |
GTATCAA | 11745 | 0.0 | 22.311749 | 1 |
ACATGGG | 3985 | 0.0 | 21.990318 | 3 |
GTACTTT | 6150 | 0.0 | 21.438774 | 14-15 |
AGTACTT | 5795 | 0.0 | 21.322441 | 12-13 |
AGAGTAC | 8220 | 0.0 | 20.503504 | 10-11 |
GCCGTAT | 215 | 0.0 | 19.909048 | 94-95 |
GGTATCA | 9025 | 0.0 | 19.900017 | 1 |
ATCAACG | 13195 | 0.0 | 19.63659 | 3 |
TCAACGC | 13270 | 0.0 | 19.596998 | 4 |
TATCAAC | 13315 | 0.0 | 19.530766 | 2 |
CAACGCA | 13380 | 0.0 | 19.365082 | 5 |
AACGCAG | 13440 | 0.0 | 19.337542 | 6 |
CATGGGG | 1540 | 0.0 | 19.07037 | 4 |
GTACTAG | 155 | 9.778176E-4 | 18.343449 | 1 |
CATGGGA | 2400 | 0.0 | 18.157862 | 4 |
ACTTTTT | 7515 | 0.0 | 18.01943 | 16-17 |