Basic Statistics
Measure | Value |
---|---|
Filename | SRR938761_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1120177 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3526 | 0.31477168340360495 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2933 | 0.26183362093669127 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1955 | 0.17452599008906627 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2910 | 0.0 | 42.41376 | 1 |
GTATCAA | 4585 | 0.0 | 33.570915 | 1 |
TCAACGC | 5615 | 0.0 | 27.123848 | 4 |
ATCAACG | 5620 | 0.0 | 27.015295 | 3 |
CAACGCA | 5715 | 0.0 | 26.64924 | 5 |
TATCAAC | 5815 | 0.0 | 26.354137 | 2 |
AACGCAG | 5860 | 0.0 | 26.151764 | 6 |
GTACATG | 4400 | 0.0 | 23.610424 | 1 |
GTATAGG | 285 | 3.6379788E-12 | 23.409016 | 1 |
ACGCAGA | 6710 | 0.0 | 22.626818 | 7 |
TACATGG | 4560 | 0.0 | 22.578285 | 2 |
CGCAGAG | 6810 | 0.0 | 22.015879 | 8 |
GAGTACT | 3560 | 0.0 | 21.057322 | 12-13 |
ACATGGG | 4580 | 0.0 | 21.029387 | 3 |
TATATGG | 300 | 1.6916601E-10 | 20.559765 | 2 |
GCAGAGT | 7090 | 0.0 | 20.47723 | 9 |
AGTACTT | 3685 | 0.0 | 19.313004 | 12-13 |
AGAGTAC | 6150 | 0.0 | 18.978245 | 10-11 |
CAGAGTA | 6915 | 0.0 | 18.62832 | 10-11 |
GTACTTT | 3990 | 0.0 | 18.550165 | 14-15 |