SRR938614_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938614_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3243225
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

$Per base sequence content$

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10604	0.32695850580826186	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8739	0.2694540156788382	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	6577	0.2027919740381873	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	6554	0.2020828033824357	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	6117	0.1886085609231552	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5975	0.18423020296155834	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	5799	0.17880350576971996	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	5650	0.17420931326072042	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	5187	0.1599333996253729	No Hit
GCCCAGGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGA	4685	0.14445497922592482	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	4336	0.1336940853625635	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	4165	0.1284215557045842	No Hit
CCTCAGACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGG	4109	0.12669487932536289	No Hit
TCCATGCCCTGAGTCCACCCCGGGGAAGGTGACAGCATTGCTTCTGTGTA	3990	0.1230256920195176	No Hit
GTGTAAATTATGTACTGCAAAAATTTTTTTAAATCTTCCGCCTTAATACT	3879	0.11960317276784682	No Hit
GGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGAAGGCT	3609	0.1112781259394584	No Hit
CCTTAATACTTCATTTTTGTTTTTAATTTCTGAATGGCCCAGGTCTGAGG	3512	0.10828727578259295	No Hit
ATTATGTACTGCAAAAATTTTTTTAAATCTTCCGCCTTAATACTTCATTT	3413	0.10523475861218387	No Hit
CCTCAACCCCCTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGG	3373	0.10400141834131152	No Hit
GTATTAAGGCGGAAGATTTAAAAAAATTTTTGCAGTACATAATTTACACA	3254	0.10033223103546624	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5825	61.150143	1
GTATCAA	11610	45.87725	1
ATCAACG	15250	34.72315	3
TATCAAC	15305	34.614395	2
TCAACGC	15480	34.207237	4
CAACGCA	15630	33.81813	5
AACGCAG	16205	32.738564	6
TGGTATC	2435	30.271755	2
TAAGGTG	2340	28.439104	5
CGCAGAG	19085	27.549322	8
ACGCAGA	19210	27.518406	7
AGGTAAG	2190	27.360956	2
GTAAGGT	2440	26.88395	4
AAGGTAA	2315	25.06227	1
GTGGTAT	3305	24.461834	1
GCAGAGT	21475	24.06308	9
GGTAAGG	2585	23.90488	3
TACATGG	14320	23.313042	2
GTACATG	14805	22.710283	1
ACATGGG	14400	22.116484	3

Summary