SRR938570_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938570_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2587360
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9915	0.38320913981819305	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7639	0.29524302764207533	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5495	0.21237864077669902	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	3859	0.14914816647084286	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	3769	0.14566971739533732	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	3566	0.13782388225836376	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	3344	0.12924370787211675	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	3237	0.12510821841568237	No Hit
GCCCAGGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGA	3052	0.1179580730938099	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	2952	0.11409312967658153	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	2791	0.10787057077484385	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4805	59.753204	1
GTATCAA	9695	47.19684	1
TATCAAC	13035	34.743877	2
ATCAACG	13215	34.126133	3
TCAACGC	13365	33.814236	4
CAACGCA	13700	32.916744	5
AACGCAG	14230	31.95296	6
TGGTATC	1965	31.197773	2
ACGCAGA	16055	28.08189	7
CGCAGAG	16220	27.62102	8
TAAGGTG	1835	26.931992	5
TACATGG	12580	25.158806	2
AGGTAAG	1615	25.011677	2
GCAGAGT	17595	24.759035	9
GTAAGGT	1920	24.750658	4
GTACATG	12940	24.727049	1
GTGGTAT	2725	24.112926	1
ACATGGG	13230	23.239803	3
GGTAAGG	2000	21.622177	3
AGAGTAC	16325	21.577602	10-11