SRR938569_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938569_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2584820
Sequences flagged as poor quality	0
Sequence length	101
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9656	0.37356566414682646	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7931	0.30682987596815253	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5703	0.22063431883071163	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	4065	0.15726433562104905	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	3720	0.14391717798531425	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	3708	0.1434529290240713	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	3350	0.12960283501365666	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	3194	0.12356759851749831	No Hit
GCCCAGGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGA	3041	0.11764842426165072	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	3034	0.11737761236759234	No Hit
GTGTAAATTATGTACTGCAAAAATTTTTTTAAATCTTCCGCCTTAATACT	2649	0.10248295819438102	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5045	57.603718	1
GTATCAA	9645	44.086514	1
TGGTATC	2190	32.143124	2
TATCAAC	13235	31.948338	2
ATCAACG	13300	31.77681	3
TCAACGC	13335	31.764708	4
CAACGCA	13540	31.213558	5
AACGCAG	14105	30.00219	6
TAAGGTG	1930	28.080688	5
GTAAGGT	1930	27.834366	4
GTGGTAT	2715	27.329092	1
AGGTAAG	1720	26.823395	2
ACGCAGA	16090	26.15327	7
CGCAGAG	16275	25.739254	8
AAGGTAA	1685	25.686913	1
GGTAAGG	2040	24.702213	3
GTACATG	12885	23.846165	1
TACATGG	12590	23.800455	2
GCAGAGT	18205	22.48873	9
ACATGGG	12955	22.017805	3