Basic Statistics
Measure | Value |
---|---|
Filename | SRR938544_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1898984 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9276 | 0.4884717301462256 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7343 | 0.3866804564967372 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5495 | 0.28936526058144774 | No Hit |
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA | 2338 | 0.12311846755949497 | No Hit |
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA | 2281 | 0.12011686249067922 | No Hit |
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC | 2099 | 0.1105327901656886 | No Hit |
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA | 2031 | 0.10695192797832948 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4375 | 0.0 | 58.108234 | 1 |
GTATCAA | 8245 | 0.0 | 44.031612 | 1 |
ATCAACG | 10995 | 0.0 | 32.615997 | 3 |
TCAACGC | 11165 | 0.0 | 32.07684 | 4 |
TATCAAC | 11205 | 0.0 | 32.051327 | 2 |
CAACGCA | 11390 | 0.0 | 31.443184 | 5 |
AACGCAG | 11780 | 0.0 | 30.402199 | 6 |
TAAGGTG | 1080 | 0.0 | 27.267597 | 5 |
GTACATG | 10590 | 0.0 | 27.102098 | 1 |
TACATGG | 10505 | 0.0 | 26.861265 | 2 |
ACGCAGA | 13460 | 0.0 | 26.501703 | 7 |
AGGTAAG | 940 | 0.0 | 26.279165 | 2 |
CGCAGAG | 13570 | 0.0 | 26.146868 | 8 |
TGGTATC | 2030 | 0.0 | 25.741436 | 2 |
ACATGGG | 10540 | 0.0 | 25.506727 | 3 |
GTAAGGT | 1090 | 0.0 | 25.274376 | 4 |
GGTAAGG | 1085 | 0.0 | 24.077528 | 3 |
GCAGAGT | 14825 | 0.0 | 23.420794 | 9 |
GAGTACT | 8105 | 0.0 | 22.826185 | 12-13 |
TGTAAGG | 750 | 0.0 | 22.168837 | 2 |