SRR938541_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938541_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1176603
Sequences flagged as poor quality	0
Sequence length	101
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4758	0.4043844865260415	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4095	0.34803582856749476	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2830	0.2405229291443248	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1862	0.15825218871616	No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA	1658	0.14091414011353023	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1337	0.11363221069468632	No Hit
GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC	1236	0.10504817682769804	No Hit
CTGAAGGACCTGGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGA	1232	0.10470821509039159	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1178	0.10011873163675428	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCTGG	1245	0.0	43.165554	2
GTACCTG	1415	0.0	38.31569	1
GGTATCA	3400	0.0	37.06766	1
ACCTGGG	1410	0.0	36.420044	3
GTATCAA	5385	0.0	34.70844	1
TAGGACC	1445	0.0	32.90546	4
GTACATG	5240	0.0	31.312378	1
TACATGG	5370	0.0	30.022968	2
ACATGGG	5085	0.0	29.361248	3
TAAGACG	130	3.0100273E-7	29.26055	4
AGGACCG	200	2.3646862E-11	28.529034	5
ATCAACG	6550	0.0	27.803106	3
TCAACGC	6555	0.0	27.781897	4
TATCAAC	6650	0.0	27.748425	2
CAACGCA	6610	0.0	27.550734	5
CATGGGG	2575	0.0	27.513437	4
GCGAGCG	70	0.00839522	27.14049	9
AACGCAG	6765	0.0	26.889748	6
ACAGCGC	95	0.0012271958	24.997818	8
CCGACCT	95	0.0012271958	24.997818	9