SRR938530_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938530_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3503220
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8218	0.23458418255205213	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6218	0.17749384851650768	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	5057	0.14435290960887412	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	4871	0.1390435085435685	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4364	0.12457110886555797	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	4320	0.123315121516776	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	4275	0.12203058900097624	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	3764	0.10744400865489465	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	3719	0.10615947613909489	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4390	53.13791	1
GTATCAA	8340	46.065987	1
ATCAACG	11095	34.398106	3
TCAACGC	11150	34.185806	4
TATCAAC	11285	33.944828	2
CAACGCA	11375	33.382347	5
AACGCAG	11885	32.06296	6
ACGCAGA	13590	27.931067	7
CGCAGAG	13815	27.407778	8
TAAGGTG	2390	25.054983	5
GTGGTAT	2420	24.393785	1
TGGTATC	2230	23.870047	2
GCAGAGT	15575	23.607744	9
GTACATG	10345	23.331915	1
GTAAGGT	2310	23.249454	4
TACATGG	10140	23.107294	2
ACATGGG	10175	22.04722	3
AGAGTAC	13705	21.473091	10-11
AGGTAAG	2405	20.947437	2
GGTAAGG	2615	20.901258	3