Basic Statistics
Measure | Value |
---|---|
Filename | SRR938511_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 988157 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5101 | 0.5162135166780177 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4262 | 0.43130798041201956 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2669 | 0.2700987798497607 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1009 | 0.10210928020547341 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2720 | 0.0 | 47.54485 | 1 |
GTATCAA | 4440 | 0.0 | 37.1578 | 1 |
TAGGGCG | 60 | 0.003932473 | 31.69657 | 5 |
TATCAAC | 5235 | 0.0 | 31.424103 | 2 |
TCAACGC | 5230 | 0.0 | 31.090515 | 4 |
ATCAACG | 5245 | 0.0 | 31.0016 | 3 |
CAACGCA | 5250 | 0.0 | 30.881514 | 5 |
AACGCAG | 5425 | 0.0 | 29.953241 | 6 |
ACGCAGA | 6125 | 0.0 | 26.608934 | 7 |
CGCAGAG | 6210 | 0.0 | 26.091692 | 8 |
GTAGCCC | 770 | 0.0 | 24.08116 | 3 |
GTGTAGC | 855 | 0.0 | 23.911446 | 1 |
GAGTACT | 4320 | 0.0 | 23.535612 | 12-13 |
GCAGAGT | 6555 | 0.0 | 23.484957 | 9 |
TAGCCCT | 1210 | 0.0 | 22.397161 | 4 |
GTACTTT | 4610 | 0.0 | 22.002419 | 14-15 |
CAGAGTA | 6540 | 0.0 | 21.141884 | 10-11 |
AGTACTT | 4310 | 0.0 | 20.448532 | 12-13 |
TAGGACC | 515 | 0.0 | 20.310423 | 4 |
GTACATG | 3415 | 0.0 | 20.048197 | 1 |