SRR938489_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938489_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1238
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTG	12	0.9693053311793215	RNA PCR Primer, Index 39 (96% over 30bp)
TCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTG	11	0.8885298869143781	RNA PCR Primer, Index 33 (96% over 29bp)
TCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTGCTTG	8	0.6462035541195477	RNA PCR Primer, Index 23 (96% over 30bp)
TCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTG	7	0.5654281098546041	RNA PCR Primer, Index 17 (96% over 28bp)
TCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTG	7	0.5654281098546041	RNA PCR Primer, Index 31 (96% over 29bp)
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5	0.40387722132471726	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5	0.40387722132471726	No Hit
TCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTG	5	0.40387722132471726	TruSeq Adapter, Index 10 (96% over 28bp)
GGATTTAAAAACTGGAACGGTGAAGGCGACAGCAGTTGGTTGGAGCAAAC	4	0.32310177705977383	No Hit
CTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTGA	4	0.32310177705977383	RNA PCR Primer, Index 33 (96% over 29bp)
ATACTGAACTGCTACGTAACACAGTTCCACCCGCCTCACATTGAAATCCA	3	0.24232633279483037	No Hit
ACTCAGACTACCCAGATGCTTACACCACATGAAACACTGTCTCTTCTATA	3	0.24232633279483037	No Hit
TCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTTCTGCTTG	3	0.24232633279483037	RNA PCR Primer, Index 26 (100% over 29bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3	0.24232633279483037	No Hit
TCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGTCTTCTGCTTG	3	0.24232633279483037	RNA PCR Primer, Index 27 (96% over 30bp)
GTTGAGGGCCTCTGTCCTGGACAGGGAGATGACGACATTGGGCTGTTCAA	2	0.16155088852988692	No Hit
CTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTGA	2	0.16155088852988692	RNA PCR Primer, Index 46 (96% over 28bp)
ATGCTACACATTGGGAGCACATCCATGTCGGGTTGGAAAAGACAGTCCTC	2	0.16155088852988692	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.16155088852988692	No Hit
GTCTCTTCTATAGGATCATTTATTTCACTAACAGCTGTTCTCATCATGAT	2	0.16155088852988692	No Hit
CTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTGCTTGA	2	0.16155088852988692	RNA PCR Primer, Index 23 (96% over 30bp)
CTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTGA	2	0.16155088852988692	RNA PCR Primer, Index 10 (96% over 28bp)
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.16155088852988692	No Hit
CTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGA	2	0.16155088852988692	RNA PCR Primer, Index 39 (96% over 30bp)
TCTCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCTTG	2	0.16155088852988692	TruSeq Adapter, Index 3 (96% over 28bp)
CCCAAAAGCCACCCCCACTCCTAAGAGGAGGATGGTCGCGTCCATGCCCT	2	0.16155088852988692	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	2	0.16155088852988692	No Hit
GCCCCCGATGCCGCTCAACATCTTGCTCCAGGCAGACTCAGACTGTGCCC	2	0.16155088852988692	No Hit
TCTCCGAGCCCACGAGACGCTACGCTATCTCGGATGCCGTCTTCTGCTTG	2	0.16155088852988692	RNA PCR Primer, Index 38 (96% over 27bp)
GGACCTGGAAGGTCCAGTCCCCATTCCTAATAAGCTGTGTGGATGAGACC	2	0.16155088852988692	No Hit
GCCAGGGCTGGCCTGTACACTGACTTGAGACCAATAAAAGTGCACACCTT	2	0.16155088852988692	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	2	0.16155088852988692	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	2	0.16155088852988692	No Hit
TCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTG	2	0.16155088852988692	TruSeq Adapter, Index 1 (96% over 28bp)
GTCACTGAGCAGACCAGAGTGTTGTGGTGGTTGAGGGCCTCTGTCCTGGA	2	0.16155088852988692	No Hit
GTCCCTCACCCTCCCAAAAGCCACCCCCACTCCTAAGAGGAGGATGGTCG	2	0.16155088852988692	No Hit
CTTCTTCGCTATCTGTGTCTTTCATTTTTCTAGCCATCATAGTCAAGAAC	2	0.16155088852988692	No Hit
CATCCATGTCGGGTTGGAAAAGACAGTCCTCGCTGTCGGGAAAACAGGGA	2	0.16155088852988692	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary