SRR938488_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938488_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1264
Sequences flagged as poor quality	0
Sequence length	101
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
TCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGTCTTCTGCTTG	15	1.1867088607594938	RNA PCR Primer, Index 33 (96% over 29bp)
TCTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTG	13	1.0284810126582278	RNA PCR Primer, Index 39 (96% over 30bp)
TCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTCTGCTTG	13	1.0284810126582278	RNA PCR Primer, Index 23 (96% over 30bp)
TCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTG	8	0.6329113924050633	RNA PCR Primer, Index 31 (96% over 29bp)
TCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTG	6	0.4746835443037975	TruSeq Adapter, Index 10 (96% over 28bp)
TCTCCGAGCCCACGAGACTAAGGCGAATCTCGTATGCCGTCTTCTGCTTG	5	0.39556962025316456	RNA PCR Primer, Index 46 (96% over 28bp)
TCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTG	5	0.39556962025316456	RNA PCR Primer, Index 17 (96% over 28bp)
CTTCTATAGGATCATTTATTTCACTAACAGCTGTTCTCATCATGATCTTT	5	0.39556962025316456	No Hit
GGATTTAAAAACTGGAACGGTGAAGGCGACAGCAGTTGGTTGGAGCAAAC	5	0.39556962025316456	No Hit
CTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGTCTTCTGCTTGA	4	0.31645569620253167	RNA PCR Primer, Index 10 (96% over 28bp)
CTCCGAGCCCACGAGACCTCTCTACATCTCGTATGCCGTCTTCTGCTTGA	3	0.23734177215189875	RNA PCR Primer, Index 39 (96% over 30bp)
TCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTTCTGCTTG	3	0.23734177215189875	RNA PCR Primer, Index 26 (100% over 29bp)
TGCTTACACCACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCAC	3	0.23734177215189875	No Hit
GTGCTCGCCCACGTCGCTGTCGTAGCGCACGTACTCCTCCCGGTTGTAGA	3	0.23734177215189875	No Hit
TCTCCGAGCCCACGAGACTAGGCATGATCTCGTATGCCGTCTTCTGCTTG	3	0.23734177215189875	TruSeq Adapter, Index 1 (96% over 28bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3	0.23734177215189875	No Hit
GAACTGCTACGTAACACAGTTCCACCCGCCTCACATTGAAATCCAAATGC	2	0.15822784810126583	No Hit
GATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTG	2	0.15822784810126583	No Hit
CCTCTGTCCTGGACAGGGAGATGACGACATTGGGCTGTTCAAGCCGCCGC	2	0.15822784810126583	No Hit
GAGCAGTGTTTGCTATCATAGCAGGATTTGTTCACTGATTCCCATTATTT	2	0.15822784810126583	No Hit
CCTTAATACTTCATTTTTGTTTTTAATTTCTGAATGGCCCAGGTCTGAGG	2	0.15822784810126583	No Hit
GTTCAAGGGCAAGAAAGGTGTTTTGTTTGGAGTCCCTGGGGCATTTACAC	2	0.15822784810126583	No Hit
GTTCTGACCCAGTGACCGCATGACGGTCCCCAGTTCCTTGGTTGTGATGG	2	0.15822784810126583	No Hit
CTCAGAGACCACGGCTGGAGTAATAAGCTTATAGTTCGGAACCTCCTTAC	2	0.15822784810126583	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT	2	0.15822784810126583	No Hit
TCCGAGCCCACGAGACGTAGAGGAATCTCGTATGCCGTCTTCTGCTTGAA	2	0.15822784810126583	TruSeq Adapter, Index 3 (96% over 28bp)
TCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGAA	2	0.15822784810126583	RNA PCR Primer, Index 38 (96% over 28bp)
ACTCAGACTACCCAGATGCTTACACCACATGAAACACTGTCTCTTCTATA	2	0.15822784810126583	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.15822784810126583	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.15822784810126583	No Hit
GCCCTGGCGTCTCCAAATGCCTCAGCGGGAAGGTCATGGCCTTGGGTTTT	2	0.15822784810126583	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.15822784810126583	No Hit
CTCTTCTATAGGATCATTTATTTCACTAACAGCTGTTCTCATCATGATCT	2	0.15822784810126583	No Hit
CTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGTCTTCTGCTTGA	2	0.15822784810126583	RNA PCR Primer, Index 31 (96% over 29bp)
ACATGAAACACTGTCTCTTCTATAGGATCATTTATTTCACTAACAGCTGT	2	0.15822784810126583	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2	0.15822784810126583	No Hit
CTCGTAGTTGTGTCTGCACACCGTGTCCAGCTCGGCCCGCGTTCGCTCCA	2	0.15822784810126583	No Hit
CTTTATAATTTGAGAGGCCTTTGCTTCAAAACGAGAAGTAATATCAATCT	2	0.15822784810126583	No Hit
GTAGTTGTGTCTGCACACCGTGTCCAGCTCGGCCCGCGTTCGCTCCAGGA	2	0.15822784810126583	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary