SRR938380_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938380_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3296369
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7596	0.23043536691432298	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	6748	0.20471009161899048	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	6561	0.19903718303381693	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	6170	0.18717564690118127	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	5879	0.1783477517231839	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5838	0.1771039589317822	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	5028	0.1525314671992122	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	5002	0.15174272055100627	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	4982	0.15113599236007863	No Hit
GCCCAGGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGA	4718	0.1431271802398336	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	4479	0.1358767783582481	No Hit
CCTCAGACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGG	4070	0.1234691868537776	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4052	0.12292313148194271	No Hit
GTGTAAATTATGTACTGCAAAAATTTTTTTAAATCTTCCGCCTTAATACT	3746	0.1136401901607496	No Hit
TCCATGCCCTGAGTCCACCCCGGGGAAGGTGACAGCATTGCTTCTGTGTA	3654	0.11084924048248238	No Hit
CCTCAACCCCCTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGG	3355	0.10177865402811397	No Hit
GGTCTGAGGCCTCCCTTTTTTTTGTCCCCCCAACTTGATGTATGAAGGCT	3352	0.10168764479947481	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4365	53.775784	1
GTATCAA	8200	46.138683	1
TATCAAC	10850	34.735847	2
ATCAACG	10995	34.27776	3
TCAACGC	11025	34.012054	4
CAACGCA	11530	32.522366	5
AACGCAG	12085	31.101774	6
TAAGGTG	2185	27.188986	5
ACGCAGA	13785	27.156631	7
CGCAGAG	13785	27.018782	8
AAGGTAA	2010	24.685572	1
AGGTAAG	2100	24.668438	2
GTACATG	11535	24.651001	1
GTGTAAG	1355	24.647034	1
GTAAGGT	2380	24.561935	4
TACATGG	11305	24.509386	2
TGGTATC	2085	23.934132	2
GTGGTAT	2270	23.74972	1
GCAGAGT	15435	23.575388	9
ACATGGG	11435	23.357944	3