Basic Statistics
Measure | Value |
---|---|
Filename | SRR938352_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1344860 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6062 | 0.450753238255283 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5171 | 0.3845009889505227 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3874 | 0.2880597236887111 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1438 | 0.10692562794640335 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1401 | 0.10417441220647503 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3025 | 0.0 | 52.314934 | 1 |
GTATCAA | 5115 | 0.0 | 40.322823 | 1 |
ATCAACG | 6605 | 0.0 | 30.994537 | 3 |
TCAACGC | 6640 | 0.0 | 30.901546 | 4 |
TATCAAC | 6735 | 0.0 | 30.54414 | 2 |
CAACGCA | 6795 | 0.0 | 30.196653 | 5 |
TGGTATC | 1185 | 0.0 | 29.668182 | 2 |
AACGCAG | 7015 | 0.0 | 29.11423 | 6 |
GTGGTAT | 1325 | 0.0 | 27.617329 | 1 |
ACCGTCC | 210 | 1.2660166E-9 | 24.879288 | 8 |
ACGCAGA | 8240 | 0.0 | 24.613037 | 7 |
CGCAGAG | 8250 | 0.0 | 24.46806 | 8 |
TACATGG | 5800 | 0.0 | 23.836506 | 2 |
GTACATG | 5885 | 0.0 | 23.822226 | 1 |
GTAAGGT | 595 | 0.0 | 23.149712 | 4 |
TGGACCG | 185 | 2.5439476E-7 | 23.106562 | 5 |
ACATGGG | 6130 | 0.0 | 22.00587 | 3 |
GCAGAGT | 9040 | 0.0 | 21.909485 | 9 |
TAAGGTG | 680 | 0.0 | 21.652964 | 5 |
GAGTACT | 5330 | 0.0 | 21.47605 | 12-13 |