SRR938304_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938304_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1497175
Sequences flagged as poor quality	0
Sequence length	101
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5763	0.38492494197405114	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4336	0.28961210279359456	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3253	0.21727586955432732	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	2547	0.17012039340758428	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	2114	0.14119925860370364	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	1945	0.12991133301050312	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	1939	0.12951057825571494	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	1717	0.11468265232855211	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	1505	0.10052265099270294	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2275	55.118027	1
GTATCAA	4400	44.53572	1
ATCAACG	5780	33.959408	3
TATCAAC	5800	33.760365	2
TCAACGC	5890	33.16381	4
CAACGCA	5975	32.692024	5
TGGTATC	1020	31.684484	2
AACGCAG	6200	31.64941	6
GTGGTAT	1145	28.731806	1
ACGCAGA	7135	27.165358	7
CGCAGAG	7285	26.541689	8
GTACATG	5240	23.475115	1
TACATGG	5160	23.302834	2
GCAGAGT	8135	23.300465	9
TAAGGTG	695	23.250484	5
GAGTACT	4900	22.394228	12-13
AGAGTAC	7325	21.790092	10-11
GTGTAAG	460	21.76611	1
ACATGGG	5345	21.696018	3
AGGTAAG	660	20.882956	2