SRR938304_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938304_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1497175
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6274	0.4190558885901782	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5605	0.3743717334312956	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4166	0.2782573847412627	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	1757	0.11735435069380666	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	1747	0.11668642610249302	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	1664	0.11114265199458982	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	1595	0.1065339723145257	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	1556	0.10392906640840249	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2890	63.291008	1
GTATCAA	5065	40.615105	1
TGGTATC	1055	35.11836	2
GTGGTAT	1160	33.174637	1
GTAAGGT	910	31.838423	4
AGGTAAG	840	29.40466	2
TATCAAC	7090	29.076063	2
ATCAACG	7155	28.610847	3
GGTAAGG	920	28.394743	3
TCAACGC	7265	28.177647	4
TAAGGTG	1065	27.650639	5
CAACGCA	7460	27.4411	5
AACGCAG	7750	26.414272	6
AAGGTAA	920	24.787489	1
ACGCAGA	8795	22.897764	7
CGCAGAG	8895	22.586945	8
GAGTACA	4295	20.574482	1
AGAGTAC	8970	20.54482	10-11
AAGGTGT	1515	20.378105	6
AGGTGTG	1620	20.230059	7