SRR938260_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938260_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2556403
Sequences flagged as poor quality	0
Sequence length	101
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12027	0.4704657286038234	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9627	0.3765838171837539	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5944	0.23251420061703884	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	4067	0.15909072239392616	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	3684	0.14410873402980673	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	3531	0.1381237621767773	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	3380	0.13221702524993126	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	3121	0.12208560230918207	No Hit
GGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGACCAAA	2853	0.11160212220060765	No Hit
CCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAAGG	2749	0.10753390603907131	No Hit
GTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGAGA	2714	0.10616479483086196	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	5660	55.283546	1
GTATCAA	10210	43.054935	1
TATCAAC	12855	33.88818	2
ATCAACG	12900	33.696888	3
TCAACGC	13125	33.11923	4
CAACGCA	13230	32.74853	5
AACGCAG	13735	31.572271	6
TGGTATC	2475	31.12896	2
GTGGTAT	2655	30.49519	1
ACGCAGA	15330	27.9385	7
CGCAGAG	15390	27.674599	8
GCAGAGT	16855	24.902067	9
GTACATG	9835	24.89062	1
TACATGG	9575	24.586191	2
TAAGGTG	1625	23.999035	5
GTAAGGT	1620	23.192385	4
GAGTACT	10790	23.17109	12-13
ACATGGG	9835	23.114624	3
CAGAGTA	15970	22.575485	10-11
AGGACCG	820	22.039566	5