SRR938257_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938257_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1887087
Sequences flagged as poor quality	0
Sequence length	101
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7959	0.42176115886548954	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6992	0.37051815841029057	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4156	0.22023361932968644	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	2503	0.13263829383594927	No Hit
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA	2311	0.12246388216335546	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	2248	0.11912540333328563	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	2145	0.11366725540475876	No Hit
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA	2102	0.11138861112391744	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1905	0.10094924081401652	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	3700	53.797607	1
GTATCAA	6560	42.147305	1
TGGTATC	1585	37.165768	2
GTGGTAT	1695	35.594646	1
ATCAACG	8310	32.982185	3
TCAACGC	8380	32.759888	4
TATCAAC	8390	32.72778	2
CAACGCA	8485	32.466446	5
AACGCAG	8765	31.429298	6
ACGCAGA	10070	27.120457	7
CGCAGAG	10250	26.505178	8
GCAGAGT	11195	24.0981	9
TAAGGTG	1235	23.459646	5
GTATAGG	360	22.433504	1
GTAAGGT	1305	21.83732	4
GTACATG	6210	21.649382	1
CAGAGTA	10675	21.601303	10-11
GAGTACT	7595	21.543688	12-13
AGGTAAG	1205	21.289104	2
TACATGG	6125	21.174212	2