SRR938240_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR938240_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2438636
Sequences flagged as poor quality	0
Sequence length	101
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11463	0.47005785201235445	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9963	0.4085480571926274	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6310	0.258751203541652	No Hit
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA	2811	0.11526935549216856	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2777	0.11387513347625476	No Hit
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC	2759	0.11313701593841803	No Hit
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA	2647	0.10854428459187841	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	4950	59.396847	1
GTATCAA	9195	42.82336	1
TGGTATC	1800	42.74758	2
GTGGTAT	2305	36.267673	1
TATCAAC	11785	32.968014	2
ATCAACG	11740	32.927822	3
TCAACGC	11965	32.386673	4
CAACGCA	12065	32.03952	5
AACGCAG	12490	31.063366	6
ACGCAGA	14180	27.160234	7
CGCAGAG	14270	26.955658	8
GCAGAGT	15805	24.09732	9
TAAGGTG	1760	24.014097	5
GAGTACT	11020	22.58215	12-13
GTACATG	8115	22.24196	1
TACATGG	8245	21.717997	2
CAGAGTA	15300	21.650303	10-11
GTACTTT	11555	21.39274	14-15
GTAAGGT	1650	21.297894	4
AGAGTAC	14860	20.709393	10-11