Basic Statistics
Measure | Value |
---|---|
Filename | SRR938225_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2446025 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10093 | 0.4126286526098466 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8379 | 0.34255577927453723 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5304 | 0.2168416103678417 | No Hit |
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA | 2998 | 0.12256620435195878 | No Hit |
CTCCCAGGGAGACCAAAGCCTTCATACATCAAGTTGGGGGGACAAAAAAA | 2839 | 0.11606586195971015 | No Hit |
AAGGTAAGGTGTGCACTTTTATTGGTCTCAAGTCAGTGTACAGGCCAGCC | 2835 | 0.11590233133349005 | No Hit |
CTCCTAAGAGGAGGATGGTCGCGTCCATGCCCTGAGTCCACCCCGGGGAA | 2756 | 0.11267260146564323 | No Hit |
GACCTGGGCCATTCAGAAATTAAAAACAAAAATGAAGTATTAAGGCGGAA | 2452 | 0.10024427387291626 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5000 | 0.0 | 53.77638 | 1 |
GTATCAA | 8450 | 0.0 | 41.771225 | 1 |
TATCAAC | 11080 | 0.0 | 31.684715 | 2 |
ATCAACG | 11115 | 0.0 | 31.410126 | 3 |
TCAACGC | 11300 | 0.0 | 30.936031 | 4 |
CAACGCA | 11365 | 0.0 | 30.675514 | 5 |
AACGCAG | 11810 | 0.0 | 29.51966 | 6 |
GTGGTAT | 2360 | 0.0 | 26.973536 | 1 |
TGGTATC | 2190 | 0.0 | 26.681246 | 2 |
ACGCAGA | 13345 | 0.0 | 25.981813 | 7 |
CGCAGAG | 13375 | 0.0 | 25.888025 | 8 |
GCAGAGT | 15050 | 0.0 | 22.596529 | 9 |
GAGTACT | 10145 | 0.0 | 22.168337 | 12-13 |
AGAGTAC | 13480 | 0.0 | 21.176285 | 10-11 |
CAGAGTA | 14135 | 0.0 | 21.06866 | 10-11 |
GTACATG | 7475 | 0.0 | 20.908833 | 1 |
GTACTTT | 10785 | 0.0 | 20.654652 | 14-15 |
TACATGG | 7255 | 0.0 | 20.495195 | 2 |
GTAAGGT | 1505 | 0.0 | 20.198013 | 4 |
AGTACTT | 10630 | 0.0 | 20.084528 | 12-13 |