Basic Statistics
Measure | Value |
---|---|
Filename | SRR938188_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3428077 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14089 | 0.41098843462384305 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11299 | 0.32960169797819594 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7129 | 0.2079591561099707 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7085 | 0.0 | 46.565655 | 1 |
GTATCAA | 12120 | 0.0 | 42.972145 | 1 |
ATCAACG | 15025 | 0.0 | 34.252907 | 3 |
TATCAAC | 15205 | 0.0 | 33.877705 | 2 |
TCAACGC | 15300 | 0.0 | 33.668335 | 4 |
CAACGCA | 15510 | 0.0 | 33.12048 | 5 |
AACGCAG | 16085 | 0.0 | 31.899931 | 6 |
ACGCAGA | 17945 | 0.0 | 28.398867 | 7 |
CGCAGAG | 18175 | 0.0 | 27.776299 | 8 |
GCAGAGT | 19635 | 0.0 | 25.105322 | 9 |
GTACATG | 10125 | 0.0 | 23.697788 | 1 |
TACATGG | 10100 | 0.0 | 22.981077 | 2 |
GAGTACT | 12490 | 0.0 | 22.930784 | 12-13 |
ACATGGG | 9940 | 0.0 | 22.251087 | 3 |
GTGGTAT | 3235 | 0.0 | 22.074419 | 1 |
AGAGTAC | 17735 | 0.0 | 21.37384 | 10-11 |
GTACTTT | 13350 | 0.0 | 21.238398 | 14-15 |
AGTACTT | 13300 | 0.0 | 20.998125 | 12-13 |
CAGAGTA | 18845 | 0.0 | 20.947226 | 10-11 |
GGACCGA | 1525 | 0.0 | 19.645365 | 6 |