Basic Statistics
Measure | Value |
---|---|
Filename | SRR938080_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2074514 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9405 | 0.4533591964190167 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7617 | 0.3671703348350505 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4757 | 0.2293067195497355 | No Hit |
GTGTACAGGCCAGCCCTGGCTGCCTCAACACCTCAACCCCCTCCCAGGGA | 2101 | 0.10127673276728912 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4945 | 0.0 | 49.493225 | 1 |
GTATCAA | 8525 | 0.0 | 38.595135 | 1 |
ATCAACG | 10480 | 0.0 | 30.952757 | 3 |
TATCAAC | 10555 | 0.0 | 30.777138 | 2 |
TCAACGC | 10625 | 0.0 | 30.440811 | 4 |
CAACGCA | 10780 | 0.0 | 30.003117 | 5 |
AACGCAG | 11185 | 0.0 | 28.991966 | 6 |
ACGCAGA | 12395 | 0.0 | 25.85114 | 7 |
CGCAGAG | 12430 | 0.0 | 25.623505 | 8 |
GTGGTAT | 2445 | 0.0 | 23.759094 | 1 |
GCAGAGT | 13355 | 0.0 | 23.313704 | 9 |
TGGTATC | 2400 | 0.0 | 22.790422 | 2 |
GAGTACT | 8765 | 0.0 | 22.153828 | 12-13 |
GTGTAGC | 1295 | 0.0 | 22.061264 | 1 |
GTACATG | 7130 | 0.0 | 21.77093 | 1 |
TACATGG | 6935 | 0.0 | 21.603785 | 2 |
GTACTTT | 8915 | 0.0 | 21.434757 | 14-15 |
CAGAGTA | 12905 | 0.0 | 21.179634 | 10-11 |
TAAGGTG | 1260 | 0.0 | 21.139452 | 5 |
AGAGTAC | 12020 | 0.0 | 20.702408 | 10-11 |