Basic Statistics
Measure | Value |
---|---|
Filename | SRR938029_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1983994 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28047 | 1.4136635493857341 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21189 | 1.067997181443089 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14989 | 0.7554962363797472 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 6687 | 0.3370473902642851 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5057 | 0.2548898837395677 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4221 | 0.21275265953425265 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3508 | 0.1768150508519683 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2840 | 0.143145594190305 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 2660 | 0.1340729861078209 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2641 | 0.13311532192133646 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2269 | 0.11436526521753596 | No Hit |
GAGTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCA | 2177 | 0.10972815441982182 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATAACG | 80 | 4.2127795E-9 | 47.517975 | 2 |
GGTATCA | 12035 | 0.0 | 40.96077 | 1 |
GTATCAA | 18955 | 0.0 | 33.786457 | 1 |
GTACATG | 15950 | 0.0 | 28.094336 | 1 |
TATCAAC | 23400 | 0.0 | 27.393911 | 2 |
GTACCGT | 140 | 5.790498E-7 | 27.153131 | 6 |
TACATGG | 16345 | 0.0 | 27.065916 | 2 |
ATCAACG | 23810 | 0.0 | 26.882284 | 3 |
TCAACGC | 23990 | 0.0 | 26.740005 | 4 |
CAACGCA | 24205 | 0.0 | 26.463224 | 5 |
ACATGGG | 16365 | 0.0 | 26.190783 | 3 |
AACGCAG | 24625 | 0.0 | 26.011871 | 6 |
CATGGGG | 5100 | 0.0 | 25.156578 | 4 |
GAGTACT | 14850 | 0.0 | 24.48761 | 12-13 |
CATGGGA | 10725 | 0.0 | 23.747913 | 4 |
ACGCAGA | 26985 | 0.0 | 23.606232 | 7 |
CGCAGAG | 27155 | 0.0 | 23.440943 | 8 |
ATGGGAG | 3610 | 0.0 | 22.771774 | 5 |
GTACTTT | 15920 | 0.0 | 22.736124 | 14-15 |
AGTACTT | 15195 | 0.0 | 22.492596 | 12-13 |