Basic Statistics
Measure | Value |
---|---|
Filename | SRR937926_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1531890 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12304 | 0.8031908296287592 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10168 | 0.6637552304669395 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7054 | 0.4604769271945114 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 4626 | 0.3019799071734916 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4188 | 0.27338777588469143 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2483 | 0.16208735614175954 | No Hit |
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2276 | 0.14857463656006634 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2011 | 0.13127574434195666 | No Hit |
GTACAAGCAGTGGTATCAACGCAGAGTACAAGCAGTGGTATCAACGCAGA | 1713 | 0.11182265045140316 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7365 | 0.0 | 34.314987 | 1 |
GTATCAA | 10700 | 0.0 | 29.924097 | 1 |
TACATGG | 8535 | 0.0 | 25.213877 | 2 |
GTACATG | 8745 | 0.0 | 25.205954 | 1 |
ATCAACG | 13050 | 0.0 | 24.350271 | 3 |
TATCAAC | 13135 | 0.0 | 24.304358 | 2 |
TCAACGC | 13145 | 0.0 | 24.281113 | 4 |
CAACGCA | 13300 | 0.0 | 23.926714 | 5 |
ACATGGG | 8825 | 0.0 | 23.574778 | 3 |
AACGCAG | 13640 | 0.0 | 23.434763 | 6 |
GAGTACT | 8525 | 0.0 | 22.75923 | 12-13 |
ACGCAGA | 15180 | 0.0 | 21.026035 | 7 |
CGCAGAG | 15230 | 0.0 | 20.957006 | 8 |
GTACTTT | 9185 | 0.0 | 20.891138 | 14-15 |
TACCTGG | 1145 | 0.0 | 20.74481 | 2 |
CATGGGA | 5565 | 0.0 | 20.73963 | 4 |
AATACCG | 115 | 0.003725511 | 20.65057 | 5 |
AGTACTT | 8920 | 0.0 | 20.526712 | 12-13 |
GCAGAGT | 16035 | 0.0 | 19.845667 | 9 |
CATGGGG | 3110 | 0.0 | 19.54832 | 4 |