SRR937813_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937813_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1091397
Sequences flagged as poor quality	0
Sequence length	101
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12769	1.169968398300527	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10243	0.9385219127411932	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7688	0.7044182822565941	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2888	0.2646149842816134	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2330	0.21348785089202188	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2270	0.20799030966733462	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1974	0.1808691062922108	No Hit
TCCCAGGACCGAGTGGGAGTAGGGGATTACTGAGTGGCATCCCCAAGCTG	1216	0.11141683548699512	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1164	0.10665229975893281	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1129	0.10344540071119859	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAAGGT	510	0.0	40.986004	4
GGTAAGG	525	0.0	39.814976	3
GGTATCA	6275	0.0	38.47532	1
GTATCAA	9965	0.0	35.76977	1
TAAGGTG	635	0.0	35.162296	5
AGGTAAG	560	0.0	33.93322	2
TATCAAC	12555	0.0	28.341198	2
TCAACGC	12700	0.0	28.055023	4
ATCAACG	12700	0.0	28.017616	3
CAACGCA	12865	0.0	27.695204	5
AACGCAG	13165	0.0	27.059134	6
GGTGTGC	830	0.0	26.325289	8
GTGTGCA	855	0.0	24.444431	9
ACGCAGA	14455	0.0	24.382555	7
CGCAGAG	14490	0.0	24.290876	8
GTACATG	6325	0.0	24.19511	1
GAGTACT	8895	0.0	24.083744	12-13
CCGATAA	140	1.7793815E-5	23.749989	9
TACATGG	6350	0.0	23.491405	2
GCAGAGT	15020	0.0	23.180746	9