SRR937801_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR937801_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	492632
Sequences flagged as poor quality	0
Sequence length	101
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5630	1.1428409035547833	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4543	0.9221893827441173	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3380	0.6861105246918593	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1567	0.3180873349680898	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1146	0.2326280063008493	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	903	0.1833011253836535	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	553	0.11225417756053199	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	529	0.1073823868526608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	2770	0.0	45.112003	1
GTATCAA	4725	0.0	38.211834	1
GTACCGG	65	0.0058328244	29.239016	1
TATCAAC	6185	0.0	29.029259	2
ATCAACG	6180	0.0	28.97589	3
TCAACGC	6215	0.0	28.889135	4
CAACGCA	6305	0.0	28.552095	5
AGGTAAG	150	3.3292963E-8	28.499361	2
AACGCAG	6410	0.0	28.084393	6
CGCGTAT	85	6.402781E-4	27.94055	7
CTAGTAC	70	0.008387916	27.142248	3
GGTAAGG	180	6.681148E-9	26.388296	3
ACGCGTA	90	8.9414313E-4	26.388296	6
TACGCGT	95	0.00122572	24.99944	5
ACGCAGA	7290	0.0	24.694233	7
CGCAGAG	7280	0.0	24.662907	8
GAGTACT	4255	0.0	24.056452	12-13
AGTACTT	4375	0.0	23.613754	12-13
GCAGAGT	7665	0.0	23.362162	9
CTAGATC	145	2.3312452E-5	22.930521	4