Basic Statistics
Measure | Value |
---|---|
Filename | SRR937773_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2257616 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10268 | 0.45481605374873313 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8422 | 0.37304838378183003 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5352 | 0.2370642305866011 | No Hit |
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 2952 | 0.1307574007271387 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5040 | 0.0 | 54.51445 | 1 |
GTATCAA | 9105 | 0.0 | 43.541206 | 1 |
ATCAACG | 11700 | 0.0 | 33.91407 | 3 |
TCAACGC | 11915 | 0.0 | 33.30285 | 4 |
TATCAAC | 12015 | 0.0 | 33.10698 | 2 |
CAACGCA | 11985 | 0.0 | 32.91155 | 5 |
AACGCAG | 12295 | 0.0 | 31.99377 | 6 |
ACGCAGA | 14170 | 0.0 | 27.29092 | 7 |
CGCAGAG | 14140 | 0.0 | 27.281624 | 8 |
TGGTATC | 2180 | 0.0 | 26.814302 | 2 |
GTACATG | 10455 | 0.0 | 25.824898 | 1 |
TACATGG | 10585 | 0.0 | 25.053085 | 2 |
GCAGAGT | 15225 | 0.0 | 24.743998 | 9 |
ACATGGG | 10435 | 0.0 | 24.272474 | 3 |
GTGGTAT | 2725 | 0.0 | 23.723936 | 1 |
GAGTACT | 8980 | 0.0 | 22.56024 | 12-13 |
CAGAGTA | 14810 | 0.0 | 21.313765 | 10-11 |
AGAGTAC | 14385 | 0.0 | 20.870241 | 10-11 |
AGTACTT | 9395 | 0.0 | 20.577784 | 12-13 |
GTACTTT | 9815 | 0.0 | 20.398066 | 14-15 |